Shinnie arrived in the summer of 2017 on a season-long loan from Birmingham City, when the Hatters were still in League Two.
The 31-year-old Scotland international signed permanently the following year, having helped the Hatters to promotion from the fourth tier, quickly earning the nickname ‘Shinniesta’ for his passing ability in the heart of midfield.
He would go on to star in the League One title success that season, winning the players’ player of the year award as the Shinnie-Stacey-Collins triangle on the right became synonymous with the side’s free-flowing style under both Jones and then interim boss Mick Harford.
Reflecting on Shinnie’s influence in 106 appearances for the club, in which he has scored ten times, Jones said: “Shins has been wonderful for us. We laid out a plan for him, but it’s a different world now and I understood why he made the choice.
“Realistically, Charlton’s a fantastic club with a good manager and they play the way that probably suits him, so if we’re looking at longevity for him, it was kind of a logical decision, but at no point did I want him to go.
“At no point did I say I want you to go, but what it has enabled us to do is to bring in Dewsbury-Hall, who could be one for the future, that kind of thing. We’ve brought Joe Morell in, who is a different age, but let's not forget Andrew Shinnie has been wonderful for this club.
“And there's a lot you won’t know about Andrew Shinnie, but Andrew Shinnie was at Birmingham in the Championship, and took a 50 per cent pay cut to come to us, because he wanted to play football, wanted to play in the right environment and then, ironically, recouped that.
“But he bought into everything we did and that’s what we love here and Andrew’s been wonderful, even at the time when he finished the League Two season really disappointed because he didn’t feature in the last six games, he didn't feel he had a future here.
“I had to reassure him that he did, and then he was arguably one of the best players. If it hadn’t been for the full backs he probably would have got player of the year, he was that good. I think he got players’ player, so that’s the contribution he made.
“And he made a contribution to us last year when I came back in especially. I can’t speak prior to that, but he played away in important games where we picked up points, and he was ready and he trained, and he was massive.
“I wish him all the best and it was a tough decision. Sorry to harp on, but he needs to be remembered fondly at this club as so much has gone on and so much he done for us that you won't have seen, and that fans won’t have seen. So we’re really happy that he’s found a little bit of a good home, and we wish him all the best.”